SASCO Project 1 Featured image

Project 1. Robust-to-fragile transitions of a phase-separated mitotic organelle in triple-negative breast cancer

Co-Leads and Co-Investigators

Kevin Janes
John Marshall Money Professor of Biomedical Engineering
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Todd Stukenberg
Professor of Biochemistry and Molecular Genetics
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Hui Zong
Professor of Microbiology, Immunology, and Cancer Biology
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Shayna Showalter
Associate Professor of Surgery
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Kristen Atkins
Professor of Pathology
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Research

Aneuploidy arising from defective chromosome segregation is pervasive among nearly all solid tumors. In TP53-mutant breast cancer, the dysregulation of core mitotic transcription factors generates error-prone chromosome segregation by the scattershot upregulation of genes tied to kinetochore functions. Many of the dysregulated genes participate in a spatially-regulated positive-feedback network that controls the spindle-assembly checkpoint and kinetochore-microtubule attachments.  At the heart of this network is the chromosome passenger complex (CPC)—comprised of Aurora B kinase (AURKB), INCENP, Survivin (BIRC5), and Borealin (CDCA8)—that accumulates at the inner centromere to control mitotic events. Our team discovered that the CPC phase separates upon reaching a critical concentration during mitosis, creating a dynamic subcompartment with specialized functions. How the phase-separated CPC adapts to the unbalancing effect of mitotic transcription factor dysregulation is unknown. The hypothesis of Project 1 is that phase-separated CPC acts as a “phenotypic capacitor” during mitosis by buffering small-to-moderate imbalances (storage) and unleashing dramatic rearrangements when a systems-level threshold is reached (discharge). We will test this hypothesis using biochemical reaction-diffusion models of spatially regulated CPC phase separation, which will be tailored to primary mammary organoids derived from a mosaic GEMM of triple-negative mammary cancer and extended to clinical samples through standard diagnostic assays. The specific aims are to 1) develop and validate a spatial systems model of CPC recruitment that isolates phase separation and predicts critical network imbalances in cancer-predisposed mammary organoids; 2) test the instability-generating potential of critical network imbalances by quantitatively perturbing triple-negative mammary premalignancies in vivo; and 3) leverage routine clinical diagnostics to predict druggable chromosomal instability signatures in any primary breast cancer. Patient-specific, systems-level models of aneuploidy susceptibility will nominate kinase inhibitors in the network that are predicted to shift cells from robust to fragile states of segregation fidelity.

SASCO Project 1 Featured image

Related Publications

A Centromere-Signaling Network Underlies the Coordination among Mitotic Events.
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Shariff A, Murphy RF, Rohde GK.
Cytometry Part A : the journal of the International Society for Analytical Cytology. 2010; 77(5):457-66.
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A linear optimal transportation framework for quantifying and visualizing variations in sets of images.
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A systems model of signaling identifies a molecular basis set for cytokine-induced apoptosis.
Janes KA, Albeck JG, Gaudet S, Sorger PK, Lauffenburger DA, Yaffe MB.
Science. 2005; 310(5754):1646-53.
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A time- and matrix-dependent TGFBR3-JUND- KRT5 regulatory circuit in single breast epithelial cells and basal-like premalignancies.
Wang CC, Bajikar SS, Jamal L, Atkins KA, Janes KA.
Nat Cell Biol. 2014; 16(4):345-56.
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Adaptive resistance of melanoma cells to RAF inhibition via reversible induction of a slowly dividing de-differentiated state.
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An analysis of critical factors for quantitative immunoblotting.
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Aurora B is enriched at merotelic attachment sites, where it regulates MCAK.
Knowlton AL, Lan W, Stukenberg PT.
Curr Biol. 2006; 16(17):1705-10.
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Aurora B phosphorylates centromeric MCAK and regulates its localization and microtubule depolymerization activity.
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Curr Biol. 2004; 14(4):273-86.
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Automated brightfield morphometry of 3D organoid populations by OrganoSeg.
Borten MA, Bajikar SS, Sasaki N, Clevers H, Janes KA.
Sci Rep. 2018; 8(1):5319.
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Automated Learning of Subcellular Variation among Punctate Protein Patterns and a Generative Model of Their Relation to Microtubules.
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Centromeric Aurora-B activation requires TD-60, microtubules, and substrate priming phosphorylation.
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Common effector processing mediates cell- specific responses to stimuli.
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Comprehensive approach for correction of motion and distortion in diffusion-weighted MRI.
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Correction of motion artifact in cardiac optical mapping using image registration.
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Cyclic Immunofluorescence (CycIF), A Highly Multiplexed Method for Single-cell Imaging.
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Data-driven modelling of signal-transduction networks.
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Detection and classification of thyroid follicular lesions based on nuclear structure from histopathology images.
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Enabling early detection of osteoarthritis from presymptomatic cartilage texture maps via transport- based learning.
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Epigenetic modulation reveals differentiation state specificity of oncogene addiction.
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Epithelium-Stroma Classification via Convolutional Neural Networks and Unsupervised Domain Adaptation in Histopathological Images.
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IEEE J Biomed Health Inform. 2017; 21(6):1625-32.
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Estimating microtubule distributions from 2D immunofluorescence microscopy images reveals differences among human cultured cell lines.
Li J, Shariff A, Wiking M, Lundberg E, Rohde GK, Murphy RF.
PLoS One. 2012; 7(11):e50292.
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Highly multiplexed imaging of single cells using a high-throughput cyclic immunofluorescence method.
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Histone H3 Thr-3 phosphorylation by Haspin positions Aurora B at centromeres in mitosis.
Wang F, Dai J, Daum JR, Niedzialkowska E, Banerjee B, Stukenberg PT, Gorbsky GJ, Higgins JM.
Science. 2010; 330(6001):231-5.
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Identification of Drivers of Aneuploidy in Breast Tumors.
Pfister K, Pipka JL, Chiang C, Liu Y, Clark RA, Keller R, Skoglund P, Guertin MJ, Hall IM, Stukenberg PT.
Cell Rep. 2018; 23(9):2758-69.
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Identifying single-cell molecular programs by stochastic profiling.
Janes KA, Wang CC, Holmberg KJ, Cabral K, Brugge JS.
Nat Methods. 2010; 7(4):311-7.
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In situ 10-cell RNA sequencing in tissue and tumor biopsy samples.
Singh S, Wang L, Schaff DL, Sutcliffe MD, Koeppel AF, Kim J, Onengut-Gumuscu S, Park KS, Zong H, Janes KA.
Sci Rep. 2019; 9(1):4836.
PubMed   DOI
Inhibition of aurora B kinase blocks chromosome segregation, overrides the spindle checkpoint, and perturbs microtubule dynamics in mitosis.
Kallio MJ, McCleland ML, Stukenberg PT, Gorbsky GJ.
Curr Biol. 2002; 12(11):900-5.
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Interpolation artifacts in sub-pixel image registration. IEEE Trans Image Process.
Rohde GK, Aldroubi A, Healy DM, Jr.
IEEE Trans Image Process. 2009; 18(2):333-45.
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Intersection of FOXO- and RUNX1-mediated gene expression programs in single breast epithelial cells during morphogenesis and tumor progression.
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Proc Natl Acad Sci U S A. 2011; 108(40):E803-12.
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Joint modeling of cell and nuclear shape variation.
Johnson GR, Buck TE, Sullivan DP, Rohde GK, Murphy RF.
Mol Biol Cell. 2012; 26(22):4046-56.
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Localizing and extracting filament distributions from microscopy images.
Basu S, Liu C, Rohde GK.
J Microsc. 2015; 258(1):13-23.
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Mechanism of Aurora B activation by INCENP and inhibition by hesperadin.
Sessa F, Mapelli M, Ciferri C, Tarricone C, Areces LB, Schneider TR, Stukenberg PT, Musacchio A.
Mol Cell. 2005; 18(3):379-91.
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Modeling the complete kinetics of coxsackievirus B3 reveals human determinants of host-cell feedback.
Lopacinski AB, Sweatt AJ, Smolko CM, Gray-Gaillard E, Borgman CA, Shah M, Janes KA.
Cell Syst. 2021; 2021;12(4):304-23 e13.
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Mosaic analysis with double markers reveals tumor cell of origin in glioma.
Liu C, Sage JC, Miller MR, Verhaak RG, Hippenmeyer S, Vogel H, Foreman O, Bronson RT, Nishiyama A, Luo L, Zong H.
Cell. 2011; 146(2):209-21.
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Multi-channel registration of diffusion tensor images using directional information.
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Nucleocytoplasmic transport of active HER2 causes fractional escape from the DCIS-like state.
Lixin Wang, B. Bishal Paudel, R. Anthony McKnight, Kevin A. Janes.
Nature Communications. 2023; 14(1):2110.
PubMed   DOI
Parameterizing cell-to-cell regulatory heterogeneities via stochastic transcriptional profiles.
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Proc Natl Acad Sci U S A. 2014; 111(5):E626-35.
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Phenotype-based probabilistic analysis of heterogeneous responses to cancer drugs and their combination efficacy.
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Radon Cumulative Distribution Transform Subspace Modeling for Image Classification.
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Robust latent-variable interpretation of in vivo regression models by nested resampling.
Caulk AW, Janes KA.
Sci Rep. 2019; 9(1):19671.
PubMed   DOI
Simultaneous profiling of 194 distinct receptor transcripts in human cells.
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Sporadic activation of an oxidative stress-dependent NRF2-p53 signaling network in breast epithelial spheroids and premalignancies.
Pereira EJ, Burns JS, Lee CY, Marohl T, Calderon D, Wang L, Atkins KA, Wang CC, Janes KA.
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Systematic analysis of BRAF(V600E) melanomas reveals a role for JNK/c-Jun pathway in adaptive resistance to drug-induced apoptosis.
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Ten simple rules for being a faculty advocate of first-year graduate students.
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PLoS Comput Biol. 2021; 17(9):e1009379.
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The adaptive bases algorithm for intensity-based nonrigid image registration.
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IEEE Trans Med Imaging. 2003; 22(11):1470-9.
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The inner centromere is a biomolecular condensate scaffolded by the chromosomal passenger complex.
Trivedi P, Palomba F, Niedzialkowska E, Digman MA, Gratton E, Stukenberg PT.
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The Library of Integrated Network-Based Cellular Signatures NIH Program: System-Level Cataloging of Human Cells Response to Perturbations.
Keenan AB, Jenkins SL, Jagodnik KM, Koplev S, He E, Torre D, Wang Z, Dohlman AB, Silverstein MC, Lachmann A, Kuleshov MV, Ma'ayan A, Stathias V, Terryn R, Cooper D, Forlin M, Koleti A, Vidovic D, Chung C, Schurer SC, Vasiliauskas J, Pilarczyk M, Shamsaei.
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The Radon Cumulative Distribution Transform and Its Application to Image Classification.
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TNF-insulin crosstalk at the transcription factor GATA6 is revealed by a model that links signaling and transcriptomic data tensors.
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Toward the virtual cell: automated approaches to building models of subcellular organization “learned” from microscopy images.
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Transformation of quiescent adult oligodendrocyte precursor cells into malignant glioma through a multistep reactivation process.
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Proc Natl Acad Sci U S A. 2014; 111(40):E4214-23.
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Tumor-Suppressor Inactivation of GDF11 Occurs by Precursor Sequestration in Triple-Negative Breast Cancer.
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PubMed   DOI